Hi Alex,
Hopefully these pictures will show you better than words can what I did, but this is my first attempt at anything like this so probably not the best approach.
My motor box ended up a little over built and too big to allow the speed controller to be mounted to it and still get the canopy on:
So I've placed the ESC on a shelf under the 'wind shield', 'accessible' by a hatch/air intake from underneath. I wanted to try and get a bit of air flow over the speed controller:
I put in a battery tray, and have just accepted that I'll have to take the wings off to access the battery, it struck me that due to the size of these 3000mAh 6S batteries, I'd have to cut a huge hatch in the airframe and through several formers to be able to get one in or out. And at least I don't need to turn the plane upside down to put a battery in.
I probably went down many wrong roads, but at the time each decision felt well thought out
I'm very interested to see what you do, and hope you enjoy flying it soon.
All the best,
Chris